Mostrando entradas con la etiqueta RNAi. Mostrar todas las entradas
Mostrando entradas con la etiqueta RNAi. Mostrar todas las entradas

domingo, 22 de diciembre de 2013

Exclusive: 'Jaw-dropping' breakthrough hailed as landmark in fight against hereditary diseases as Crispr technique heralds genetic revolution

Exclusive: 'Jaw-dropping' breakthrough hailed as landmark in fight against hereditary diseases as Crispr technique heralds genetic revolution




A breakthrough in genetics – described as “jaw-dropping” by one Nobel scientist – has created intense excitement among DNA experts around the world who believe the discovery will transform their ability to edit the genomes of all living organisms, including humans.

The development has been hailed as a milestone in medical science because it promises to revolutionise the study and treatment of a range of diseases, from cancer and incurable viruses to inherited genetic disorders such as sickle-cell anaemia and Down syndrome.

For the first time, scientists are able to engineer any part of the human genome with extreme precision using a revolutionary new technique called Crispr, which has been likened to editing the individual letters on any chosen page of an encyclopedia without creating spelling mistakes. The landmark development means it is now possible to make the most accurate and detailed alterations to any specific position on the DNA of the 23 pairs of human chromosomes without introducing unintended mutations or flaws, scientists said.

The technique is so accurate that scientists believe it will soon be used in gene-therapy trials on humans to treat incurable viruses such as HIV or currently untreatable genetic disorders such as Huntington’s disease. It might also be used controversially to correct gene defects in human IVF embryos, scientists said.

Until now, gene therapy has had largely to rely on highly inaccurate methods of editing the genome, often involving modified viruses that insert DNA at random into the genome – considered too risky for many patients.

The new method, however, transforms genetic engineering because it is simple and easy to edit any desired part of the DNA molecule, right down to the individual chemical building-blocks or nucleotides that make up the genetic alphabet, researchers said.

Crispr is absolutely huge. It’s incredibly powerful and it has many applications, from agriculture to potential gene therapy in humans,” said Craig Mello of the University of Massachusetts Medical School, who shared the 2006 Nobel Prize for medicine for a previous genetic discovery called RNA interference.

This is really a triumph of basic science and in many ways it’s better than RNA interference. It’s a tremendous breakthrough with huge implications for molecular genetics. It’s a real game-changer,” Professor Mello told The Independent.

It’s one of those things that you have to see to believe. I read the scientific papers like everyone else but when I saw it working in my own lab, my jaw dropped. A total novice in my lab got it to work,” Professor Mello said.

In addition to engineering the genes of plants and animals, which could accelerate the development of GM crops and livestock, the Crispr technique dramatically “lowers the threshold” for carrying out “germline” gene therapy on human IVF embryos, Professor Mello added.

 
The new method of gene therapy makes it simple and easy to edit any desired part of the DNA molecule (Getty Creative)

Germline gene therapy on sperm, eggs or embryos to eliminate inherited diseases alters the DNA of all subsequent generations, but fears over its safety, and the prospect of so-called “designer babies”, has led to it being made illegal in Britain and many other countries.

The new gene-editing technique could address many of the safety concerns because it is so accurate. Some scientists now believe it is only a matter of time before IVF doctors suggest that it could be used to eliminate genetic diseases from affected families by changing an embryo’s DNA before implanting it into the womb.

If this new technique succeeds in allowing perfectly targeted correction of abnormal genes, eliminating safety concerns, then the exciting prospect is that treatments could be developed and applied to the germline, ridding families and all their descendants of devastating inherited disorders,” said Dagan Wells, an IVF scientist at Oxford University.

It would be difficult to argue against using it if it can be shown to be as safe, reliable and effective as it appears to be. Who would condemn a child to terrible suffering and perhaps an early death when a therapy exists, capable of repairing the problem?” Dr Wells said.


sábado, 10 de agosto de 2013

Shushing RNA

ORIGINAL: The Scientist
By Edyta Zielinska
August 1, 2013

The cell detains potentially harmful RNA messages in the spliceosome long enough to create interfering RNAs against the aberrant messages.

 
GENOME JUMPERS: When unrestrained, transposons replicate and insert them­selves randomly throughout the genome. COURTESY OF PHILLIP DUMESIC, UCSF (Adapted from Transposon by Lauren Solomon, Broad Institute)


The paper
P.A. Dumesic et al., “Stalled spliceosomes are a signal for RNAi-mediated genome defense,” Cell, 152:957-68, 2013.

The finding
Although small interfering RNAs (siRNAs) are largely explored today for their potential in gene therapy, the phenomenon was first described in plants, which employ siRNAs to disable foreign RNA from viral infections. Researchers have since learned that siRNAs also play a role in suppressing transposable elements, which replicate and reinsert throughout the genome, occasionally disrupting the function of essential genes. Now, Hiten Madhani of the University of California, San Francisco, and colleagues have implicated the spliceosome, a molecular complex that excises introns from pre-messenger RNAs (pre-mRNAs), in siRNA-mediated suppression.

The splice of life
Like any gene, transposable elements are transcribed into pre-mRNAs that must be processed by the spliceosome. Madhani’s team noticed, however, that transposable-element pre-mRNAs appeared to be associated with spliceosomes more frequently than other pre-mRNAs.

The scan
When the researchers searched for proteins associated with the spliceosome and with siRNAs, they discovered a novel complex they dubbed spliceosome-coupled and nuclear RNAi, or SCANR, that appeared to be involved in producing siRNAs. Madhani reasoned that the spliceosome was “being used to recognize self- from nonself-DNA,” such as transposable elements. Such transcripts would have been introduced later in a cell’s evolution, and may not be optimized for the cell’s splicing machinery, causing it to stall, thereby giving SCANR more time to produce siRNA against the offending message.

The model
The paper reveals “an unexpected and previously unappreciated way for the cell to score an RNA as ‘aberrant’ and therefore in need of silencing,” says Erik Sontheimer, a researcher at Northwestern University.

domingo, 20 de enero de 2013

RNAi drug company promises delivery – of both results and RNA

ORIGINAL: OBR Review
January 9, 2013

RNA interference may be a widely used technique in molecular biology, but adapting this biological process to the development of RNAi-based drugs has posed a vexing problem for scientists since its discovery in 1998, which earned Craig Mello and Andrew Fire the Nobel Prize in 2006. A recent advancement by UCSD professor Steven Dowdy shows promise in allowing the short nucleic acids composing RNA and microRNA molecules to cross cell membranes, and in this way blocking the activity of genes involved in cancer and other diseases.

UCSD School of Medicine. biomedsci.ucsd.edu. 
The technology, which is protected intellectual property of the University of California San Diego and revolves around “masking” the negative charge of double-stranded RNA molecules with specific side groups which are then later clipped off by a naturally occurring enzyme, has been licensed in an exclusive deal to the three-month old, half-dozen-employees spin-out company Solstice Biologics LLC. The company was founded by Prof. Dowdy along with Chief Scientific Officer Curt Bradshaw, former vice president of chemistry at CovX Pharmaceutical, a company which was acquired by Pfizer in 2007. Prof. Dowdy was also the scientific founder of Traversa Therapeutics, which filed for bankruptcy in April last year.

Previous companies that have invested copiously in attempting to solve this problem with no robust results include pharmaceutical giants such as Merck, Alnylam, and Roche. Professor Steven Dowdy and colleagues may however be nearing a solution with their cell-permeable RNAi pro-drug, which they called RiboNucleic Neutrals (RNNs). Other companies, such as Merck, have favoured an approach using antisense nucleic acid analogues such as morpholinos, which mimic single stranded nucleic acids and are able to cross the cell membrane in a neutral or slightly positively charged state. Unlike small interfering RNA, morpholinos do not degrade their target RNA molecules, but instead bind to complementary sequences and prevent binding of other interacting partners via steric blocking.

The company has announced in a January 4th press release a partnership with San Francisco-based VenBio and Aeris Capital AG in the form of a $18 million USD series A commitment to the San Diego start-up to achieve a set of pre-established “milestones and goals” over the next 18 months, said VenBio’s Dr. Corey Goodman, who also sits on Solstice’s board as executive chairman. While it is unclear at this early stage whether the technology will actually work in humans and animals, the potential therapeutic benefits are great, and can be applied to a wide range of diseases.

Dr. Goodman, previously a tenured professor at Stanford University and at University of California Berkeley and head of Pfizer’s Biotherapeutics and Bioinnovation Center, further explained that this early stage financing will allow further development of the technology platform and testing to ensure that the process “works and is safe for humans”. He anticipates the company to license the RNN technology to drug developers, once at least one working therapeutic has been taken into early clinical trials. In case the RNAi drug will fail to provide the expected results, he envisaged that the underlying technology could be sold to a reagent company for developing research lab chemicals. The global market for RNAi drug delivery was worth $7 billion USD in 2010, and is expected to grow to nearly $24.1 billion by 2015 according to a January 2011 report by BCC Research.